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Zirconium in PDB 6hyb: Zr(IV)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)

Enzymatic activity of Zr(IV)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)

All present enzymatic activity of Zr(IV)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl):
3.2.1.17;

Protein crystallography data

The structure of Zr(IV)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl), PDB code: 6hyb was solved by L.Vandebroek, L.Van Meervelt, T.N.Parac-Vogt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.16 / 1.96
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.610, 78.610, 37.110, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 20.5

Other elements in 6hyb:

The structure of Zr(IV)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) also contains other interesting chemical elements:

Tungsten (W) 17 atoms
Potassium (K) 1 atom

Zirconium Binding Sites:

The binding sites of Zirconium atom in the Zr(IV)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) (pdb code 6hyb). This binding sites where shown within 5.0 Angstroms radius around Zirconium atom.
In total only one binding site of Zirconium was determined in the Zr(IV)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl), PDB code: 6hyb:

Zirconium binding site 1 out of 1 in 6hyb

Go back to Zirconium Binding Sites List in 6hyb
Zirconium binding site 1 out of 1 in the Zr(IV)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Zirconium with other atoms in the Zr binding site number 1 of Zr(IV)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zr201

b:37.6
occ:0.30
 ZR1 A:ZRW201 0.0 37.6 0.3
O3L A:ZRW201 2.2 41.5 0.3
O2L A:ZRW201 2.2 38.3 0.3
O1L A:ZRW201 2.2 38.1 0.3
O4L A:ZRW201 2.2 37.1 0.3
O8 A:ZRW201 3.2 40.8 0.3
O A:HOH316 3.7 42.5 1.0
O A:HOH308 3.7 46.1 1.0
W2 A:ZRW201 3.8 35.7 0.3
W1 A:ZRW201 3.8 35.4 0.3
W6 A:ZRW201 3.9 39.9 0.3
W7 A:ZRW201 3.9 37.1 0.3
O2 A:ZRW201 4.1 35.2 0.3
O17 A:ZRW201 4.1 36.5 0.3
P1 A:ZRW201 4.2 35.0 0.3
O6 A:ZRW201 4.3 40.0 0.3
O7 A:ZRW201 4.3 39.1 0.3
O22 A:ZRW201 4.4 39.6 0.3
O23 A:ZRW201 4.4 39.6 0.3
O16 A:ZRW201 4.5 43.7 0.3
O18 A:ZRW201 4.7 41.9 0.3
O15 A:ZRW201 4.8 40.6 0.3
O19 A:ZRW201 4.8 42.3 0.3
O3 A:ZRW201 4.9 39.2 0.3
O1 A:ZRW201 4.9 35.4 0.3

Reference:

L.Vandebroek, Y.Mampaey, S.Antonyuk, L.Van Meervelt, T.N.Parac-Vogt. Noncovalent Complexes Formed Between Metal-Substituted Polyoxometalates and Hen Egg White Lysozyme Eur J Inorg Chem 2019.
ISSN: ESSN 1099-0682
DOI: 10.1002/EJIC.201801113
Page generated: Wed Dec 16 14:05:36 2020

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